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Sunday, May 31
Session 072: Mobile DNA and Genome Plasticity
2:30 p.m. – 2:45 p.m. | La Nouvelle Orleans Ballroom B (Second Level)
Extensive DNA Inversions and Excisions in Two Type I Restriction Modification Loci Enhance Epigenetic Diversification of Streptococcus pneumoniae
J. Li, Tsinghua Univ., Beijing, China

Session 062: Carbapenemases: A Global Scourge
3:00 p.m. – 3:20 p.m. | Meeting Room 339
Second and Third Generation Sequencing of Carbapenem-Resistant Enterobacteriaceae to Track Transmissions, Design Genomics-Based Diagnostics and Capture the Diversity of KPCPositive Plasmids
Julia Segre NIH, Bethesda, MD

Program Presentations

For Research Use Only. Not for use in diagnostic procedures. © Copyright 2015, Pacific Biosciences of California, Inc. All rights reserved. Information in this document is subject to change without notice. Pacific Biosciences assumes no responsibility for any errors or omissions in this document. Certain notices, terms, conditions and/or use restrictions may pertain to your use of Pacific Biosciences products and/or third party products. Please refer to the applicable Pacific Biosciences Terms and Conditions of Sale and to the applicable license terms at http://www.pacificbiosciences.com/licenses.html. Pacific Biosciences, the Pacific Biosciences logo, PacBio, SMRT, SMRTbell and Iso-Seq are trademarks of Pacific Biosciences in the United States and/or certain other countries. All other trademarks are the sole property of their respective owners.
  • 397. Comparative Analysis of Twenty-four Complete Genome Sequences of “Salmonella enterica” Serotypes Anatum, Montevideo, Typhimurium and Newport Isolated from Ground Beef or Asymptomatic Cattle on Farm or at Harvest
    D. M. Brichta-Harhay et al. USDA ARS U.S. Meat Animal Res. Ctr.

     
  • 398. The genome sequence of an insect pathogenic bacterium Photorhabdus temperata M1021
    S-J. Hong et al. Sch. of Applied Biosciences, Kyungpook Natl. Univ.

     
  • 899. Whole Genome Comparison of Two Chryseobacterium gallinarum Strains Provides Insights into Their Keratin
    Biodegradation 

    G-S. Park et al. Sch. of Applied Biosciences, Kyungpook Natl. Univ.
  • 908. Genome of the Erythromycin-Producing, Unicellular Actinomycete Aeromicrobium erythreum
    E. S. Miller et al. North Carolina State Univ.
Monday, June 01
10:45 a.m. – 12:00 p.m.
  • 981. Allelic Variants of blaVIM Reside on Diverse Mobile Genetic Elements in Gramnegative Clinical Isolates from the USA
    A. C. Ong et al. WRAIR

     
  • 989. Genomics Insights into the Diversification of Pathogenic Campylobacter fetus Subspecies
    B. Duim et al. Utrecht Univ., Faculty of Veterinary Medicine

     
  • 1105. Phenotypic Switching of Mucoid Pseudomonas aeruginosa to Small Colony Variants in CF Patients Potentiates Biofilm Formation and Persistent Infection
    S. Irvine, Univ. of Glasgow

     
  • 1252. Diverse Assemblages of AlternativeNitrogenase Genes are Active in Coastal Sediments
    D. L. McRose et al. Princeton Univ

     
  • 1341. Metagenomes of Native and Electrodeenriched Microbial Communities from the Soudan Iron Mine
    J. P. Badalamenti et al. Univ. of Minnesota

     
  • 1342. Barcoding Strategies for Multiplexing of Samples Using Single-Molecule, Real Time Sequencing
    W. Lee et al. Pacific Biosciences

     
  • 1343. Analysis of Full-Length Metagenomic 16S Genes by Single Molecule, Real-Time Sequencing
    A. Sethuraman et al. Pacific Biosciences

     
  • 1347. Full-length cDNA Sequencing of Prokaryotic Transcriptome and Metatranscriptome Samples
    M. Boitano et al. Pacific Biosciences

     
  • 1351. Low-Input Long-Read Sequencing for Complete Microbial Genomes and Metagenomic Community Analysis
    C. Heiner et al. Pacific Biosciences

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Poster Presentations
All posters are on display in Exhibit Hall E

Sunday, May 31
10:45 a.m. – 12:00 p.m.
  • 192. Regulation of DNA Phosphorothioate Modification in Bacteria
    S. Chen et al. Wuhan Univ.

     
  • 214. Genetic and Genomic Analysis of a Gliding Bacterium in the Genus Maribacter
    B. R. K. Roller et al. Michigan State Univ.

     
  • 285. Predicting Climate Feedbacks: Metabolic Response of Soil Microbial Communities to Phosphorus and Oxygen Availability in Tropical Ecosystems
    E. R. Johnston et al. Georgia Inst. of Technology

     
  • 392. Whole Genome Sequencing of Trichomonas vaginalis
    J. Harris et al. Roche Molecular Systems, Inc.

     
  • 394. Comparative Gene Sequencing of Vaccine Candidate Antigens in Plasmodium falciparum
    L. J. Kenefic et al. Dept. of Med. and Res. Technology; Univ. of Maryland Sch. of Med.
2:30 p.m. – 1:45 p.m.
  • 1446. Analysis of Complete Genome Sequence of Bacillus cereus FORC_010, Foodborne Pathogen Isolated from Fresh Kimchi in Korea, and its Virulence Factors
    H. Na et al. Seoul Natl. Univ.

     
  • 1447. Genomic Examination of the 2011 Group A Streptococcal Scarlet Fever Outbreak in Hong Kong
    M. Walker, Univ. of Queensland

     
  • 1451. Complete de novo Genome Characterization of Isolates from Outbreaks by Means of PacBio and Illumina Sequencing Technologies
    R. Tobes et al. Era7 Bioinformatics

     
  • 1624. Assembling, Analyzing, and Closing Microbial Genomes Using PacBio Data in DNASTAR’s Lasergene Genomics Suite
    M. Keyser et al. DNASTAR

     
  • 1626. The Lactococcal Megaplasmidome 
    P. Kelleher et al. Univ. Coll.

     
  • 1633. Characterization and Genomic Insights from a Novel Isolate within the Genus
    Dehalogenimonas
    T. A. Key et al. Louisiana State Univ.

     
  • 1684. Identification, Dynamics, and Impacts of Extra-Chromosomal Bacteriophage in Staphylococcus aureus
    D. R. Deutsch et al. The Rockefeller Univ.

     
  • 1709. The Long and Short of It: Combination of Long and Short Read Deep Sequencing Unveils the Evolutionary History and Diversity of Virioplankton
    D. J. Nasko et al. Univ. of Delaware

     
  • 1715. The World is Your Oyster: Ribonucleotide Reductase Amplicons Reveal Novel and Persistent Viral Populations in Oyster Extrapallial Fluid
    E. Sakowski et al. Univ. of Delaware
Tuesday, June 02
10:45 a.m. – 12:00 p.m.
  • 1978. Characterization of Bacterial Genomic Reference Materials
    N. D. Olson et al. Natl. Inst. of Standards & Technology

     
  • 2059. Single-Strand Specific, Plasmid Borne DNA Methyltransferases M.BceJIII and M.EcoGIX May Be Involved in the Regulation of Plasmid Replication
    A. I. Fomenkov et al. New England Biolabs

     
  • 2256. Bioinformatics Analysis Pipeline for Rapid Molecular Detection and Characterization of Atypical Bacteria that
    Cause Pneumonia
    S. S. Morrison et al. CDC

     
  • 2259. Genome Mining for Secondary Metabolites and Epigenomics for Two Soil Actinomycetales Co-Isolates
    R. M. Mariita et al. Auburn Univ.

     
  • 2260. Next-Generation Sequencing Provides Rapid Trace-back to Food Sources during a Foodborne Outbreak of Salmonellosis
    Y. Luo et al. FDA/CFSAN

     
  • 2265. Joint Analysis of Bacterial DNA Methylation, Predicted Promoter and Regulation Motifs for Biological Significance
    G. P. Harhay et al. USDA-ARS U.S. Meat Animal Res. Ctr.

     
  • 2269. Application of Multiple Sequencing Platforms for Determination of the Complete Sequence of Pseudomonas fluorescens strain NCIMB 11764
    L. B. Jones et al. Univ. of North Texas

     
  • 2272. Improved OTU-picking Using Longread Bacterial 16S Amplicon Sequencing and Generic Hierarchical Clustering
    O. Franzén et al. Icahn Sch. of Med. at MountSinai
2:30 p.m. – 1:45 p.m.
  • 2491. The Isolation, Sequencing And Transposon Mutagenesis of a Newly Isolated Janthinobacterium sp. in Woods Hole, MA during the Microbial Diversity Summer Course 2014
    A.F. Sarno et al. California Inst. of Technology

     
  • 2544. Profiling Metagenomic Communities Using Circular Consensus and Single Molecule, Real-Time Sequencing
    R. J. Hall et al, Pacific Biosciences

     
  • 2691. Multiple Mechanisms Regulate Restriction-Modification System Diversity in Eleven Bovine Pathogenic Strains
    B. P. Anton et al. New England Biolabs

     
  • 2715. Full-Length HIV-1 env Deep Sequencing in a Donor with Broadly Neutralizing V1/V2 Antibodies
    M. L. Smith et al. Pacific Biosciences

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